Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015914351.1_cds_XP_016464354.1_57401
CDS Infomation

[gene=LOC107787320] [db_xref=GeneID:107787320] [protein=protein HOTHEAD-like isoform X2] [protein_id=XP_016464354.1] [location=join(23173..23263,24180..24567,27640..27950,28054..28439,28746..29314,29388..29442)] [gbkey=CDS]
Sequence

ATGGCTGTGGTTGGTCCTGTGATTGTGAAGCTCCTTCTTCCCTTAATACTTCTATGGCTC
AACTTTAACTCCTCTCTCAGTCTTACTCAAGCAAGAAAATGGGAATCATGGAAAGATAGA
TATCCATTTATAAAAGCTGCAAGCTCATTCTCATCATCATCTTCATCTTCATCAAATGTT
GGGAGCCAAAAGGCAAATTATTATGACTATATAATAGTGGGAGGAGGCACAGCTGGTTGT
CCTTTGGCAGCAACTTTGTCACAGAAATTCAGTGTATTATTACTGGAAAGAGGAGGAGTT
CCATTTGCAAATGTAAATGTGTCATTCATGCAAAACTTTCATATCTCTTTGGCTGACACT
TCACCATCTTCTGCTTCCCAAATTTTTGTCTCAACTGATGGAGTCTTTAATTCAAGAGCT
AAAATCTTGGGCGGAGGCAGTTGCATCAATGCTGGTTTCTACAGTCGTGCTAGCTCAAGT
TATATCAAGAAAGCAGGGTGGGATTCTACACTGGTGAATGAATCATACCCTTGGATTGAG
AAGCAAATTGTTCATAAACCAAACTTGGCACCATGGCAAAGAGCTGTAAGGGACGGTCTT
TTAGAAGTTGGTATCTCACCTTTTAATGGATTTACGTATGATCATGTATATGGAACCAAA
TTTGGAGGAACCATTTTCGACAGAATTGGTCGTCGTAAATCTGCAGCTGAACTACTCGCC
TCAGCTAACCCTGAGAAGCTTCATGTTTTGGTCCATGCAACAGTTCAAAAGATTGAGTTT
GACACATCAGGAAAGAAGCCAAGAGCAGTAGGAGTGATATTCAAAGATGAAAATGGGAAC
AAACACAAGGCCTTTCTTTCAAAGAGAAGGGGAAGTGAAATTATAGTGTCATCTGGTGCA
ATTGGGAGCCCTCAGATTCTGATGCTCAGTGGAATAGGACCAAAGAAAGAATTGGAAAAA
TTGAACATCCCGGTGGTACTTGACAATAAATTCGTAGGTAAAGGCATGTCAGACAACCCC
TTAAACACCATATTTGTTCCCACAAATAGGCCTGTTGAGCAGTCGCTGATCCAGACGGTA
GGAATTACCAAGATGGGGGTCTATATTGAAGCTAGTAGTGGATATGGACAAACCGAAGAC
AGCATTCATTGCAATCATGGTGTCGTTTCAGCTGAGATAGGGCAACTCTCCACCGTTCCT
CCGAAGCAGAGAGCACAAGAAGCGATTGAAGTGTACAAAAGAAACAAGAAAAATGTTCCA
CAAGAAGCATTCAGAGGAGGTTTCATATTAGCAAAGATAGCTACACCTTTATCAACAGGG
AAGATTAGCCTAAAGAGTAACAACATTGATGACATTCCTTCTGTCACCTTCAACTACTTC
AGCCATCCACGCGATCTAAAGCGATGTGTAAATGGCATACGCATTATGGAGAAGCTTGTG
AAGTCAAAACATTTCACCAACTACACACAGTGCGACAAGGAGACATTGGACAAGTTGCTT
AACATCAGTGTCCAAGCTAATATTAATCTTATACCGAAACACACCAATGATACAGAGTCA
CTTGAACAGTTCTGCAAAGACACTGTGATCACAATATGGCACTATCACGGGGGTTGCCAT
GTCGGCAAGGTGGTAACCTCTGATTACAAGGTTATTAATGTCCACAGGCTCCGTGTAATT
GATGGTTCGACATTCACTGAGTCGCCAGGCACCAATCCTCAAGCCACACTTATGATGATG
GGCAGGTATATGGGAGTACAGATTTTAAGAGAAAGATTAGGAAGAGCAGCTGGTTTATAA

Peptide Sequence

PEP ID

XP_016464354.1
PEP Infomation

PREDICTED: protein HOTHEAD-like isoform X2 [Nicotiana tabacum]
Sequence

MAVVGPVIVKLLLPLILLWLNFNSSLSLTQARKWESWKDRYPFIKAASSFSSSSSSSSNV
GSQKANYYDYIIVGGGTAGCPLAATLSQKFSVLLLERGGVPFANVNVSFMQNFHISLADT
SPSSASQIFVSTDGVFNSRAKILGGGSCINAGFYSRASSSYIKKAGWDSTLVNESYPWIE
KQIVHKPNLAPWQRAVRDGLLEVGISPFNGFTYDHVYGTKFGGTIFDRIGRRKSAAELLA
SANPEKLHVLVHATVQKIEFDTSGKKPRAVGVIFKDENGNKHKAFLSKRRGSEIIVSSGA
IGSPQILMLSGIGPKKELEKLNIPVVLDNKFVGKGMSDNPLNTIFVPTNRPVEQSLIQTV
GITKMGVYIEASSGYGQTEDSIHCNHGVVSAEIGQLSTVPPKQRAQEAIEVYKRNKKNVP
QEAFRGGFILAKIATPLSTGKISLKSNNIDDIPSVTFNYFSHPRDLKRCVNGIRIMEKLV
KSKHFTNYTQCDKETLDKLLNISVQANINLIPKHTNDTESLEQFCKDTVITIWHYHGGCH
VGKVVTSDYKVINVHRLRVIDGSTFTESPGTNPQATLMMMGRYMGVQILRERLGRAAGL

Transcript Sequence

Gene sequence data has not been registered.